| 1 | import * as ComprehendMedical from "@/AWS/ComprehendMedical"; |
| 2 | import * as Lambda from "@/AWS/Lambda"; |
| 3 | import * as Duration from "effect/Duration"; |
| 4 | import * as Effect from "effect/Effect"; |
| 5 | import * as Layer from "effect/Layer"; |
| 6 | import { HttpServerRequest } from "effect/http/HttpServerRequest"; |
| 7 | import * as HttpServerResponse from "effect/http/HttpServerResponse"; |
| 8 | import path from "pathe"; |
| 9 | |
| 10 | const main = path.resolve(import.meta.dirname, "handler.ts"); |
| 11 | |
| 12 | // Well-formed (1-32 chars of [a-zA-Z0-9-]) but nonexistent job id — describe |
| 13 | // and stop must answer with the typed ResourceNotFoundException. |
| 14 | const FAKE_JOB_ID = "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"; |
| 15 | |
| 16 | export class ComprehendMedicalTestFunction extends Lambda.Function<Lambda.Function>()( |
| 17 | "ComprehendMedicalTestFunction", |
| 18 | ) {} |
| 19 | |
| 20 | export default ComprehendMedicalTestFunction.make( |
| 21 | { |
| 22 | main, |
| 23 | functionUrl: true, |
| 24 | // Comprehend Medical inference can exceed Lambda's 3s default under load. |
| 25 | timeout: Duration.seconds(30), |
| 26 | }, |
| 27 | Effect.gen(function* () { |
| 28 | const detectEntities = yield* ComprehendMedical.DetectEntitiesV2(); |
| 29 | const detectPHI = yield* ComprehendMedical.DetectPHI(); |
| 30 | const inferICD10CM = yield* ComprehendMedical.InferICD10CM(); |
| 31 | const inferRxNorm = yield* ComprehendMedical.InferRxNorm(); |
| 32 | const inferSNOMEDCT = yield* ComprehendMedical.InferSNOMEDCT(); |
| 33 | |
| 34 | const listEntitiesJobs = |
| 35 | yield* ComprehendMedical.ListEntitiesDetectionV2Jobs(); |
| 36 | const listICD10CMJobs = yield* ComprehendMedical.ListICD10CMInferenceJobs(); |
| 37 | const listPHIJobs = yield* ComprehendMedical.ListPHIDetectionJobs(); |
| 38 | const listRxNormJobs = yield* ComprehendMedical.ListRxNormInferenceJobs(); |
| 39 | const listSNOMEDCTJobs = |
| 40 | yield* ComprehendMedical.ListSNOMEDCTInferenceJobs(); |
| 41 | |
| 42 | const describeEntitiesJob = |
| 43 | yield* ComprehendMedical.DescribeEntitiesDetectionV2Job(); |
| 44 | const describeICD10CMJob = |
| 45 | yield* ComprehendMedical.DescribeICD10CMInferenceJob(); |
| 46 | const describePHIJob = yield* ComprehendMedical.DescribePHIDetectionJob(); |
| 47 | const describeRxNormJob = |
| 48 | yield* ComprehendMedical.DescribeRxNormInferenceJob(); |
| 49 | const describeSNOMEDCTJob = |
| 50 | yield* ComprehendMedical.DescribeSNOMEDCTInferenceJob(); |
| 51 | |
| 52 | const stopEntitiesJob = |
| 53 | yield* ComprehendMedical.StopEntitiesDetectionV2Job(); |
| 54 | const stopICD10CMJob = yield* ComprehendMedical.StopICD10CMInferenceJob(); |
| 55 | const stopPHIJob = yield* ComprehendMedical.StopPHIDetectionJob(); |
| 56 | const stopRxNormJob = yield* ComprehendMedical.StopRxNormInferenceJob(); |
| 57 | const stopSNOMEDCTJob = yield* ComprehendMedical.StopSNOMEDCTInferenceJob(); |
| 58 | |
| 59 | const startEntitiesJob = |
| 60 | yield* ComprehendMedical.StartEntitiesDetectionV2Job(); |
| 61 | const startICD10CMJob = yield* ComprehendMedical.StartICD10CMInferenceJob(); |
| 62 | const startPHIJob = yield* ComprehendMedical.StartPHIDetectionJob(); |
| 63 | const startRxNormJob = yield* ComprehendMedical.StartRxNormInferenceJob(); |
| 64 | const startSNOMEDCTJob = |
| 65 | yield* ComprehendMedical.StartSNOMEDCTInferenceJob(); |
| 66 | // The remaining start bindings attach their IAM statements at deploy |
| 67 | // time; the PHI start callable is the one exercised at runtime. |
| 68 | void startEntitiesJob; |
| 69 | void startICD10CMJob; |
| 70 | void startRxNormJob; |
| 71 | void startSNOMEDCTJob; |
| 72 | |
| 73 | return { |
| 74 | fetch: Effect.gen(function* () { |
| 75 | const request = yield* HttpServerRequest; |
| 76 | const url = new URL(request.originalUrl); |
| 77 | const pathname = url.pathname; |
| 78 | |
| 79 | // Cheap readiness route — no Comprehend Medical call. |
| 80 | if (request.method === "GET" && pathname === "/ping") { |
| 81 | return yield* HttpServerResponse.json({ ok: true }); |
| 82 | } |
| 83 | |
| 84 | if (request.method === "GET" && pathname === "/entities") { |
| 85 | const result = yield* detectEntities({ |
| 86 | Text: "Patient takes 50 mg atenolol daily for hypertension.", |
| 87 | }); |
| 88 | return yield* HttpServerResponse.json({ |
| 89 | entities: (result.Entities ?? []).map((entity) => ({ |
| 90 | text: entity.Text, |
| 91 | category: entity.Category, |
| 92 | type: entity.Type, |
| 93 | })), |
| 94 | modelVersion: result.ModelVersion, |
| 95 | }); |
| 96 | } |
| 97 | |
| 98 | if (request.method === "GET" && pathname === "/phi") { |
| 99 | const result = yield* detectPHI({ |
| 100 | Text: "John Doe, age 47, was seen on 2024-01-03 at Seattle Clinic.", |
| 101 | }); |
| 102 | return yield* HttpServerResponse.json({ |
| 103 | entities: (result.Entities ?? []).map((entity) => ({ |
| 104 | text: entity.Text, |
| 105 | type: entity.Type, |
| 106 | })), |
| 107 | }); |
| 108 | } |
| 109 | |
| 110 | if (request.method === "GET" && pathname === "/icd10") { |
| 111 | const result = yield* inferICD10CM({ |
| 112 | Text: "Patient presents with type 2 diabetes and hypertension.", |
| 113 | }); |
| 114 | return yield* HttpServerResponse.json({ |
| 115 | entities: (result.Entities ?? []).map((entity) => ({ |
| 116 | text: entity.Text, |
| 117 | codes: (entity.ICD10CMConcepts ?? []).map((concept) => ({ |
| 118 | code: concept.Code, |
| 119 | description: concept.Description, |
| 120 | })), |
| 121 | })), |
| 122 | }); |
| 123 | } |
| 124 | |
| 125 | if (request.method === "GET" && pathname === "/rxnorm") { |
| 126 | const result = yield* inferRxNorm({ |
| 127 | Text: "Patient takes 50 mg atenolol daily and 500 mg metformin twice a day.", |
| 128 | }); |
| 129 | return yield* HttpServerResponse.json({ |
| 130 | entities: (result.Entities ?? []).map((entity) => ({ |
| 131 | text: entity.Text, |
| 132 | concepts: (entity.RxNormConcepts ?? []).map((concept) => ({ |
| 133 | code: concept.Code, |
| 134 | description: concept.Description, |
| 135 | })), |
| 136 | })), |
| 137 | }); |
| 138 | } |
| 139 | |
| 140 | if (request.method === "GET" && pathname === "/snomed") { |
| 141 | const result = yield* inferSNOMEDCT({ |
| 142 | Text: "Patient presents with type 2 diabetes and hypertension.", |
| 143 | }); |
| 144 | return yield* HttpServerResponse.json({ |
| 145 | entities: (result.Entities ?? []).map((entity) => ({ |
| 146 | text: entity.Text, |
| 147 | concepts: (entity.SNOMEDCTConcepts ?? []).map((concept) => ({ |
| 148 | code: concept.Code, |
| 149 | description: concept.Description, |
| 150 | })), |
| 151 | })), |
| 152 | }); |
| 153 | } |
| 154 | |
| 155 | // Exercises the five List* bindings — real calls, no side effects. |
| 156 | if (request.method === "GET" && pathname === "/jobs") { |
| 157 | const [entities, icd10cm, phi, rxnorm, snomedct] = yield* Effect.all( |
| 158 | [ |
| 159 | listEntitiesJobs({}), |
| 160 | listICD10CMJobs({}), |
| 161 | listPHIJobs({}), |
| 162 | listRxNormJobs({}), |
| 163 | listSNOMEDCTJobs({}), |
| 164 | ], |
| 165 | { concurrency: 5 }, |
| 166 | ); |
| 167 | return yield* HttpServerResponse.json({ |
| 168 | entities: |
| 169 | entities.ComprehendMedicalAsyncJobPropertiesList?.length ?? 0, |
| 170 | icd10cm: |
| 171 | icd10cm.ComprehendMedicalAsyncJobPropertiesList?.length ?? 0, |
| 172 | phi: phi.ComprehendMedicalAsyncJobPropertiesList?.length ?? 0, |
| 173 | rxnorm: rxnorm.ComprehendMedicalAsyncJobPropertiesList?.length ?? 0, |
| 174 | snomedct: |
| 175 | snomedct.ComprehendMedicalAsyncJobPropertiesList?.length ?? 0, |
| 176 | }); |
| 177 | } |
| 178 | |
| 179 | // Exercises the Describe*/Stop* bindings against a nonexistent job: |
| 180 | // IAM authorizes first, so the typed ResourceNotFoundException proves |
| 181 | // both the wiring and the granted action. |
| 182 | if (request.method === "GET" && pathname === "/job-checks") { |
| 183 | const success = () => "Success" as string; |
| 184 | const tagOf = (e: { readonly _tag: string }) => |
| 185 | Effect.succeed(e._tag as string); |
| 186 | |
| 187 | const [describes, stops] = yield* Effect.all([ |
| 188 | Effect.all( |
| 189 | [ |
| 190 | describeEntitiesJob({ JobId: FAKE_JOB_ID }).pipe( |
| 191 | Effect.map(success), |
| 192 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 193 | ), |
| 194 | describeICD10CMJob({ JobId: FAKE_JOB_ID }).pipe( |
| 195 | Effect.map(success), |
| 196 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 197 | ), |
| 198 | describePHIJob({ JobId: FAKE_JOB_ID }).pipe( |
| 199 | Effect.map(success), |
| 200 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 201 | ), |
| 202 | describeRxNormJob({ JobId: FAKE_JOB_ID }).pipe( |
| 203 | Effect.map(success), |
| 204 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 205 | ), |
| 206 | describeSNOMEDCTJob({ JobId: FAKE_JOB_ID }).pipe( |
| 207 | Effect.map(success), |
| 208 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 209 | ), |
| 210 | ], |
| 211 | { concurrency: 5 }, |
| 212 | ), |
| 213 | Effect.all( |
| 214 | [ |
| 215 | stopEntitiesJob({ JobId: FAKE_JOB_ID }).pipe( |
| 216 | Effect.map(success), |
| 217 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 218 | ), |
| 219 | stopICD10CMJob({ JobId: FAKE_JOB_ID }).pipe( |
| 220 | Effect.map(success), |
| 221 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 222 | ), |
| 223 | stopPHIJob({ JobId: FAKE_JOB_ID }).pipe( |
| 224 | Effect.map(success), |
| 225 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 226 | ), |
| 227 | stopRxNormJob({ JobId: FAKE_JOB_ID }).pipe( |
| 228 | Effect.map(success), |
| 229 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 230 | ), |
| 231 | stopSNOMEDCTJob({ JobId: FAKE_JOB_ID }).pipe( |
| 232 | Effect.map(success), |
| 233 | Effect.catchTag("ResourceNotFoundException", tagOf), |
| 234 | ), |
| 235 | ], |
| 236 | { concurrency: 5 }, |
| 237 | ), |
| 238 | ]); |
| 239 | return yield* HttpServerResponse.json({ describes, stops }); |
| 240 | } |
| 241 | |
| 242 | // Exercises a Start* binding: the request passes the |
| 243 | // comprehendmedical:StartPHIDetectionJob IAM check and fails typed on |
| 244 | // the same-account-but-nonexistent data-access role supplied by the |
| 245 | // test (DATA_ACCESS_ROLE_ARN_INVALID). An unauthorized caller would |
| 246 | // get AccessDeniedException instead — so InvalidRequestException |
| 247 | // proves the binding granted the Start action. |
| 248 | if (request.method === "GET" && pathname === "/job-start") { |
| 249 | const roleArn = url.searchParams.get("roleArn"); |
| 250 | if (!roleArn) { |
| 251 | return yield* HttpServerResponse.json( |
| 252 | { error: "roleArn query parameter required" }, |
| 253 | { status: 400 }, |
| 254 | ); |
| 255 | } |
| 256 | const outcome = yield* startPHIJob({ |
| 257 | InputDataConfig: { |
| 258 | S3Bucket: "alchemy-nonexistent-input-bucket", |
| 259 | S3Key: "notes/", |
| 260 | }, |
| 261 | OutputDataConfig: { |
| 262 | S3Bucket: "alchemy-nonexistent-output-bucket", |
| 263 | }, |
| 264 | DataAccessRoleArn: roleArn, |
| 265 | LanguageCode: "en", |
| 266 | }).pipe( |
| 267 | Effect.map(() => ({ tag: "Success" })), |
| 268 | Effect.catchTag( |
| 269 | [ |
| 270 | "AccessDeniedException", |
| 271 | "InvalidRequestException", |
| 272 | "ResourceNotFoundException", |
| 273 | ], |
| 274 | (e) => Effect.succeed({ tag: e._tag as string }), |
| 275 | ), |
| 276 | ); |
| 277 | return yield* HttpServerResponse.json(outcome); |
| 278 | } |
| 279 | |
| 280 | return yield* HttpServerResponse.json( |
| 281 | { error: "Not found", method: request.method, pathname }, |
| 282 | { status: 404 }, |
| 283 | ); |
| 284 | }).pipe(Effect.orDie), |
| 285 | }; |
| 286 | }).pipe( |
| 287 | Effect.provide( |
| 288 | Layer.mergeAll( |
| 289 | ComprehendMedical.DetectEntitiesV2Http, |
| 290 | ComprehendMedical.DetectPHIHttp, |
| 291 | ComprehendMedical.InferICD10CMHttp, |
| 292 | ComprehendMedical.InferRxNormHttp, |
| 293 | ComprehendMedical.InferSNOMEDCTHttp, |
| 294 | ComprehendMedical.ListEntitiesDetectionV2JobsHttp, |
| 295 | ComprehendMedical.ListICD10CMInferenceJobsHttp, |
| 296 | ComprehendMedical.ListPHIDetectionJobsHttp, |
| 297 | ComprehendMedical.ListRxNormInferenceJobsHttp, |
| 298 | ComprehendMedical.ListSNOMEDCTInferenceJobsHttp, |
| 299 | ComprehendMedical.DescribeEntitiesDetectionV2JobHttp, |
| 300 | ComprehendMedical.DescribeICD10CMInferenceJobHttp, |
| 301 | ComprehendMedical.DescribePHIDetectionJobHttp, |
| 302 | ComprehendMedical.DescribeRxNormInferenceJobHttp, |
| 303 | ComprehendMedical.DescribeSNOMEDCTInferenceJobHttp, |
| 304 | ComprehendMedical.StopEntitiesDetectionV2JobHttp, |
| 305 | ComprehendMedical.StopICD10CMInferenceJobHttp, |
| 306 | ComprehendMedical.StopPHIDetectionJobHttp, |
| 307 | ComprehendMedical.StopRxNormInferenceJobHttp, |
| 308 | ComprehendMedical.StopSNOMEDCTInferenceJobHttp, |
| 309 | ComprehendMedical.StartEntitiesDetectionV2JobHttp, |
| 310 | ComprehendMedical.StartICD10CMInferenceJobHttp, |
| 311 | ComprehendMedical.StartPHIDetectionJobHttp, |
| 312 | ComprehendMedical.StartRxNormInferenceJobHttp, |
| 313 | ComprehendMedical.StartSNOMEDCTInferenceJobHttp, |
| 314 | ), |
| 315 | ), |
| 316 | ), |
| 317 | ); |